primertool

• primertool package
  • Submodules
  • primertool.exceptions module
    • InSilicoPCRError
    • InSilicoPCRRequestError
    • PrimertoolError
    • PrimertoolExonLengthError
    • PrimertoolGenomeError
    • PrimertoolInputError
    • PrimertoolIntronicPositionError
    • PrimertoolMutalyzerError
    • PrimertoolNoPrimerFoundError
  • primertool.functions module
    • calculate_targets()
    • correct_intronic_variant()
    • filter_unique_primers()
    • find_sequence_positions()
    • get_gene_information()
    • get_snps()
    • mask_snps()
    • mutalyzer_error_handler()
    • parse_mutation()
    • purge_primer_pair()
    • reduce_numbers_in_string()
    • remove_whitespaces()
    • split_nm()
  • primertool.insilicopcr module
    • InSilicoPCR
      • InSilicoPCR.forward_primer
      • InSilicoPCR.reverse_primer
      • InSilicoPCR.fasta_pcr
      • InSilicoPCR.is_uniquely_binding()
  • primertool.logger module
    • CustomFormatter
      • CustomFormatter.fmt
      • CustomFormatter.FORMATS
      • CustomFormatter.format()
    • init_logger()
  • primertool.primertool module
    • ExonPrimerGenerator
      • ExonPrimerGenerator.nm_number
      • ExonPrimerGenerator.exon_number
      • ExonPrimerGenerator.variant_pos
      • ExonPrimerGenerator.gene_info
      • ExonPrimerGenerator.chromosome
      • ExonPrimerGenerator.ordertable
      • ExonPrimerGenerator.check_exon()
      • ExonPrimerGenerator.check_nm_number()
      • ExonPrimerGenerator.get_exon_boundaries()
      • ExonPrimerGenerator.get_ordertable()
    • ExonPrimerPair
      • ExonPrimerPair.gene_info
      • ExonPrimerPair.gene_name
      • ExonPrimerPair.chromosome
      • ExonPrimerPair.nm_number
      • ExonPrimerPair.strand
      • ExonPrimerPair.exon_number
      • ExonPrimerPair.orderprimer_forwards
      • ExonPrimerPair.orderprimer_reverse
      • ExonPrimerPair.primer_forwards
      • ExonPrimerPair.primer_reverse
      • ExonPrimerPair.ordertable
      • ExonPrimerPair.get_order_primers()
      • ExonPrimerPair.make_order_table()
    • GenePrimerGenerator
      • GenePrimerGenerator.nm_number
      • GenePrimerGenerator.gene_info
      • GenePrimerGenerator.chromosome
      • GenePrimerGenerator.ordertable
      • GenePrimerGenerator.check_nm_number()
    • GenomicPositionPrimerGenerator
      • GenomicPositionPrimerGenerator.chromosome
      • GenomicPositionPrimerGenerator.start
      • GenomicPositionPrimerGenerator.end
      • GenomicPositionPrimerGenerator.ordertable
      • GenomicPositionPrimerGenerator.check_chromosome()
      • GenomicPositionPrimerGenerator.get_ordertable()
    • GenomicPositionPrimerPair
      • GenomicPositionPrimerPair.chromosome
      • GenomicPositionPrimerPair.start
      • GenomicPositionPrimerPair.end
      • GenomicPositionPrimerPair.orderprimer_forwards
      • GenomicPositionPrimerPair.orderprimer_reverse
      • GenomicPositionPrimerPair.primer_forwards
      • GenomicPositionPrimerPair.primer_reverse
      • GenomicPositionPrimerPair.ordertable
      • GenomicPositionPrimerPair.get_order_primers()
      • GenomicPositionPrimerPair.make_order_table()
    • PrimerGenerator
      • PrimerGenerator.genome_assembly
      • PrimerGenerator.kuerzel
      • PrimerGenerator.genome_dir
      • PrimerGenerator.genome
      • PrimerGenerator.max_insert
      • PrimerGenerator.min_insert
      • PrimerGenerator.dist_exon_borders
      • PrimerGenerator.chromosome
      • PrimerGenerator.check_genome_assembly()
      • PrimerGenerator.check_insert_size()
      • PrimerGenerator.design_primer()
      • PrimerGenerator.fetch_genome()
      • PrimerGenerator.iterate_positions()
    • PrimerPair
      • PrimerPair.primer_info
      • PrimerPair.mt
      • PrimerPair.bp
      • PrimerPair.chromosome
      • PrimerPair.ordertable
      • PrimerPair.orderprimer_forwards
      • PrimerPair.orderprimer_reverse
      • PrimerPair.primer_forwards
      • PrimerPair.primer_reverse
    • VariantPrimerGenerator
      • VariantPrimerGenerator.variant
      • VariantPrimerGenerator.nm_number
      • VariantPrimerGenerator.ordertable
      • VariantPrimerGenerator.check_mutation()
      • VariantPrimerGenerator.check_variant()
  • primertool.ucsc_database module
    • query()
  • primertool.unittest module
    • PrimertoolTest
      • PrimertoolTest.test_get_gene_information()
      • PrimertoolTest.test_query_ucsc_database()
  • Module contents
• streamlit module
• ucsc_download_script module
  • create_db()
  • fetch_db_table()
• local_sql module
  • fetch_db_table()